2016 joint SysMod/NetBio meeting @ ISMB

2016 joint SysMod/NetBio meeting @ ISMB 2018-02-06T15:57:17+00:00

Overview

Over the last two decades, systems biology has become a large and diverse field of research in life sciences, building up on the successes of molecular biology and genomics. Computational biology is at the core of systems biology investigations and several ISCB Communities of Special Interests (COSIs) have been created that focus on relevant scientific aspects or approaches. Because systems biology’s main interest lies in understanding the emergent properties of complex systems, the study of network structures and the quantitative descriptions of systems’ behavior are its two main pillars.

The NetBio (Network Biology) COSI provides an interface between tool developers and users in the field of network biology. It particularly focuses on two major areas: (1) the development of network-related tools and resources, and (2) the application of network analysis and visualization in the study of biology and medicine. Mathematical modeling of biological systems has recently become more reliant on bioinformatic data to build, train and validate models. The SysMod (Computational Modeling of Biological Systems) COSI aims at bridging the gap between bioinformatic analysis and systems biology modeling.

This ISMB COSI session will focus on the conjoint use of network analysis and mathematical modeling. Two short presentations will introduce the COSIs, their aims and their activities. The session will feature four scientific talks by leading experts. Lars-Juhl Jensen (University of Copenhagen) developed some of the leading network databases and prediction tools. Nathan Price (Institute of Systems Biology and University of Washington) is an expert of multi-scale modelling of metabolism and regulatory genomics. Dr. Natasa Przulj developed innovative approaches to extract biological knowledge from network topology. Jonathan Karr (Mount Sinai School of Medicine) developed the first mathematical model of a complete cell. The session will be completed with discussions around the challenges and opportunities of mathematical modeling of biological networks, and the possible synergies between the two COSIs.

We expect the audience to be made partly of researchers involved in network analysis and mathematical modeling, and partly of ISMB attendees interested to learn more about those domains of research. Therefore we will particularly welcome participants who did not attend the NetBio and SysMod Special Interest Groups (SIGs).

Speakers

Lars Juhl Jensen
University of Copenhagen, DK

Jonathan Karr
Icahn School of Medicine at Mount Sinai, US

Nathan Price
Institute for Systems Biology and University of Washington, US

Natasa Przulj
University College London, UK

Schedule

10:10-11:10 Session I chaired by Alexander Pico
Introduction
Alexander Pico
University of California, San Fransisco, US
10:10-10:40 STRING: Protein networks from data and text mining
Lars Juhl Jensen
University of Copenhagen, DK
10:40-11:10 Nathan Price
Institute of Systems Biology, US
11:10-11:40 Coffee break
11:40-12:40 Session II chaired by Nicolas Le Novère
Community discussion
Nicolas Le Novère
Babraham Institute, UK
11:40-12:10 Patient-Specific Network Data Fusion for Stratification, Biomarker Discovery and Personalizing Treatment
Natasa Przulj
University College London, UK
12:10-12:40 Whole-cell models: combining genomics and dynamical modeling
Jonathan Karr
Icahn School of Medicine at Mount Sinai, US
Closing Comments
Alexander Pico1 and Nicolas Le Novère2
1University of California, San Fransisco, US and 2Babraham Institute, UK

Date

July 10, 2016

Registration

Registration is available through the ISMB conference .

Accommodations

Accommodations are available at several hotels through ISMB .

More information

For more information, please contact the SysMod coordinators .